Stress response, amino acid biosynthesis and pathogenesis genes expressed in Salmonella enterica colonizing tomato shoot and root surfaces.
Identifieur interne : 000045 ( Main/Exploration ); précédent : 000044; suivant : 000046Stress response, amino acid biosynthesis and pathogenesis genes expressed in Salmonella enterica colonizing tomato shoot and root surfaces.
Auteurs : Sanghyun Han [États-Unis] ; Angela Marie C. Ferelli [États-Unis] ; Shih-Shun Lin [Taïwan] ; Shirley A. Micallef [États-Unis]Source :
- Heliyon [ 2405-8440 ] ; 2020.
Abstract
Salmonella enterica can colonize all parts of the tomato plant. Tomatoes have been frequently implicated in salmonellosis outbreaks. In agricultural settings, Salmonella must overcome stress, nutritional and competition barriers to become established on plant surfaces. Knowledge of the genetic mechanisms underlying Salmonella-plant associations is limited, especially when growing epiphytically. A genome-wide transcriptomic analysis of Salmonella Typhimurium (SeT) was conducted with RNA-Seq to elucidate strategies for epiphytic growth on live, intact tomato shoot and root surfaces. Six plasmid-encoded and 123 chromosomal genes were significantly (using Benjamini-Hochberg adjusted p-values) up-regulated; 54 and 110 detected in SeT on shoots and roots, respectively, with 35 common to both. Key signals included NsrR regulon genes needed to mitigate nitrosative stress, oxidative stress genes and host adaptation genes, including environmental stress, heat shock and acid-inducible genes. Several amino acid biosynthesis genes and genes indicative of sulphur metabolism and anaerobic respiration were up-regulated. Some Type III secretion system (T3SS) effector protein genes and their chaperones from pathogenicity island-2 were expressed mostly in SeT on roots. Gene expression in SeT was validated against SeT and also the tomato outbreak strain Salmonella Newport with a high correlation (R2 = 0.813 and 0.874, respectively; both p < 0.001). Oxidative and nitrosative stress response genes, T3SS2 genes and amino acid biosynthesis may be needed for Salmonella to successfully colonize tomato shoot and root surfaces.
DOI: 10.1016/j.heliyon.2020.e04952
PubMed: 33024855
PubMed Central: PMC7527575
Affiliations:
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Ferelli</name><affiliation wicri:level="4"><nlm:affiliation>Department of Plant Science and Landscape Architecture, University of Maryland, College Park, Maryland, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Science and Landscape Architecture, University of Maryland, College Park, Maryland</wicri:regionArea><placeName><region type="state">Maryland</region><settlement type="city">College Park (Maryland)</settlement></placeName><orgName type="university">Université du Maryland</orgName></affiliation></author><author><name sortKey="Lin, Shih Shun" sort="Lin, Shih Shun" uniqKey="Lin S" first="Shih-Shun" last="Lin">Shih-Shun Lin</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Biotechnology, National Taiwan University, Taipei, Taiwan.</nlm:affiliation><country xml:lang="fr">Taïwan</country><wicri:regionArea>Institute of Biotechnology, National Taiwan University, Taipei</wicri:regionArea><wicri:noRegion>Taipei</wicri:noRegion></affiliation></author><author><name sortKey="Micallef, Shirley A" sort="Micallef, Shirley A" uniqKey="Micallef S" first="Shirley A" last="Micallef">Shirley A. Micallef</name><affiliation wicri:level="4"><nlm:affiliation>Department of Plant Science and Landscape Architecture, University of Maryland, College Park, Maryland, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Science and Landscape Architecture, University of Maryland, College Park, Maryland</wicri:regionArea><placeName><region type="state">Maryland</region><settlement type="city">College Park (Maryland)</settlement></placeName><orgName type="university">Université du Maryland</orgName></affiliation><affiliation wicri:level="4"><nlm:affiliation>Centre for Food Safety and Security Systems, University of Maryland, College Park, Maryland, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Centre for Food Safety and Security Systems, University of Maryland, College Park, Maryland</wicri:regionArea><placeName><region type="state">Maryland</region><settlement type="city">College Park (Maryland)</settlement></placeName><orgName type="university">Université du Maryland</orgName></affiliation></author></analytic><series><title level="j">Heliyon</title><idno type="ISSN">2405-8440</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><i>Salmonella enterica</i> can colonize all parts of the tomato plant. Tomatoes have been frequently implicated in salmonellosis outbreaks. In agricultural settings, <i>Salmonella</i> must overcome stress, nutritional and competition barriers to become established on plant surfaces. Knowledge of the genetic mechanisms underlying <i>Salmonella-</i>plant associations is limited, especially when growing epiphytically. A genome-wide transcriptomic analysis of <i>Salmonella</i> Typhimurium (<i>Se</i>T) was conducted with RNA-Seq to elucidate strategies for epiphytic growth on live, intact tomato shoot and root surfaces. Six plasmid-encoded and 123 chromosomal genes were significantly (using Benjamini-Hochberg adjusted <i>p-</i>values) up-regulated; 54 and 110 detected in <i>Se</i>T on shoots and roots, respectively, with 35 common to both. Key signals included NsrR regulon genes needed to mitigate nitrosative stress, oxidative stress genes and host adaptation genes, including environmental stress, heat shock and acid-inducible genes. Several amino acid biosynthesis genes and genes indicative of sulphur metabolism and anaerobic respiration were up-regulated. Some Type III secretion system (T3SS) effector protein genes and their chaperones from pathogenicity island-2 were expressed mostly in <i>Se</i>T on roots. Gene expression in <i>Se</i>T was validated against <i>Se</i>T and also the tomato outbreak strain <i>Salmonella</i> Newport with a high correlation (<i>R</i><sup>2</sup> = 0.813 and 0.874, respectively; both <i>p <</i> 0.001). Oxidative and nitrosative stress response genes, T3SS2 genes and amino acid biosynthesis may be needed for <i>Salmonella</i> to successfully colonize tomato shoot and root surfaces.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">33024855</PMID><DateRevised><Year>2020</Year><Month>10</Month><Day>09</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">2405-8440</ISSN><JournalIssue CitedMedium="Print"><Volume>6</Volume><Issue>9</Issue><PubDate><Year>2020</Year><Month>Sep</Month></PubDate></JournalIssue><Title>Heliyon</Title><ISOAbbreviation>Heliyon</ISOAbbreviation></Journal><ArticleTitle>Stress response, amino acid biosynthesis and pathogenesis genes expressed in <i>Salmonella enterica</i> colonizing tomato shoot and root surfaces.</ArticleTitle><Pagination><MedlinePgn>e04952</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.heliyon.2020.e04952</ELocationID><Abstract><AbstractText><i>Salmonella enterica</i> can colonize all parts of the tomato plant. Tomatoes have been frequently implicated in salmonellosis outbreaks. In agricultural settings, <i>Salmonella</i> must overcome stress, nutritional and competition barriers to become established on plant surfaces. Knowledge of the genetic mechanisms underlying <i>Salmonella-</i>plant associations is limited, especially when growing epiphytically. A genome-wide transcriptomic analysis of <i>Salmonella</i> Typhimurium (<i>Se</i>T) was conducted with RNA-Seq to elucidate strategies for epiphytic growth on live, intact tomato shoot and root surfaces. Six plasmid-encoded and 123 chromosomal genes were significantly (using Benjamini-Hochberg adjusted <i>p-</i>values) up-regulated; 54 and 110 detected in <i>Se</i>T on shoots and roots, respectively, with 35 common to both. Key signals included NsrR regulon genes needed to mitigate nitrosative stress, oxidative stress genes and host adaptation genes, including environmental stress, heat shock and acid-inducible genes. Several amino acid biosynthesis genes and genes indicative of sulphur metabolism and anaerobic respiration were up-regulated. Some Type III secretion system (T3SS) effector protein genes and their chaperones from pathogenicity island-2 were expressed mostly in <i>Se</i>T on roots. Gene expression in <i>Se</i>T was validated against <i>Se</i>T and also the tomato outbreak strain <i>Salmonella</i> Newport with a high correlation (<i>R</i><sup>2</sup> = 0.813 and 0.874, respectively; both <i>p <</i> 0.001). Oxidative and nitrosative stress response genes, T3SS2 genes and amino acid biosynthesis may be needed for <i>Salmonella</i> to successfully colonize tomato shoot and root surfaces.</AbstractText><CopyrightInformation>© 2020 The Author(s).</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Han</LastName><ForeName>Sanghyun</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Department of Plant Science and Landscape Architecture, University of Maryland, College Park, Maryland, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ferelli</LastName><ForeName>Angela Marie C</ForeName><Initials>AMC</Initials><AffiliationInfo><Affiliation>Department of Plant Science and Landscape Architecture, University of Maryland, College Park, Maryland, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lin</LastName><ForeName>Shih-Shun</ForeName><Initials>SS</Initials><AffiliationInfo><Affiliation>Institute of Biotechnology, National Taiwan University, Taipei, Taiwan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Micallef</LastName><ForeName>Shirley A</ForeName><Initials>SA</Initials><AffiliationInfo><Affiliation>Department of Plant Science and Landscape Architecture, University of Maryland, College Park, Maryland, USA.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Centre for Food Safety and Security Systems, University of Maryland, College Park, Maryland, USA.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>09</Month><Day>29</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Heliyon</MedlineTA><NlmUniqueID>101672560</NlmUniqueID><ISSNLinking>2405-8440</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Agricultural science</Keyword><Keyword MajorTopicYN="N">Food safety</Keyword><Keyword MajorTopicYN="N">Human pathogens on plants</Keyword><Keyword MajorTopicYN="N">Microbiology</Keyword><Keyword MajorTopicYN="N">Nitrosative stress</Keyword><Keyword MajorTopicYN="N">NsrR regulon</Keyword><Keyword MajorTopicYN="N">Oxidative stress</Keyword><Keyword MajorTopicYN="N">Type III secretion systems</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2020</Year><Month>01</Month><Day>03</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2020</Year><Month>03</Month><Day>13</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2020</Year><Month>09</Month><Day>11</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>10</Month><Day>7</Day><Hour>5</Hour><Minute>51</Minute></PubMedPubDate><PubMedPubDate 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Ferelli</name><name sortKey="Micallef, Shirley A" sort="Micallef, Shirley A" uniqKey="Micallef S" first="Shirley A" last="Micallef">Shirley A. Micallef</name><name sortKey="Micallef, Shirley A" sort="Micallef, Shirley A" uniqKey="Micallef S" first="Shirley A" last="Micallef">Shirley A. Micallef</name></country><country name="Taïwan"><noRegion><name sortKey="Lin, Shih Shun" sort="Lin, Shih Shun" uniqKey="Lin S" first="Shih-Shun" last="Lin">Shih-Shun Lin</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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